PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005130t1
Common NameTCM_005130
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 192aa    MW: 21410.7 Da    PI: 6.3583
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005130t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.5e-194090155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  Thecc1EG005130t1 40 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAFCLRG 90
                      68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.2E-134090IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-314199IPR001471AP2/ERF domain
PROSITE profilePS5103223.8414198IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2241100IPR016177DNA-binding domain
SMARTSM003809.3E-3841104IPR001471AP2/ERF domain
PRINTSPR003673.4E-134253IPR001471AP2/ERF domain
CDDcd000185.41E-314299No hitNo description
PRINTSPR003673.4E-1380100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEQPPYTEDD LNTSTTSPES TTTAETHPKH DSKRGGTRHP VYRGVRKRRW GKWVSEIREP  60
RKKSRIWLGS FPVPEMAAKA YDVAAFCLRG RKAQLNFPDE VEDLPRPSTC TARDIQAAAA  120
KAAHSVVSSK KSQESSEDGD GHGADDFWGE IELPELMNSG CQWNSRGWTF TGDGSWLEVE  180
AQQQQQFLAC L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1836100974Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021280657.11e-141ethylene-responsive transcription factor ERF023
SwissprotQ1ECI21e-64ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A061E0C81e-141A0A061E0C8_THECC; Integrase-type DNA-binding superfamily protein
STRINGEOX956831e-141(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.14e-63ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]