PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG005256t1

Common Name

TCM_005256

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

WRKY

Protein Properties

Length: 220aa MW: 24622.1 Da PI: 9.8665

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG005256t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.5	1.1e-32	140	198	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ Thecc1EG005256t1 140 LDDGYRWRKYGQKAVKNSNYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 198 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.9E-33	126	198	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-28	133	199	IPR003657	WRKY domain
PROSITE profile	PS50811	28.943	135	200	IPR003657	WRKY domain
SMART	SM00774	3.1E-38	140	199	IPR003657	WRKY domain
Pfam	PF03106	6.0E-26	141	198	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MFLSPYSLRG ALRLINLQTM DGQESNQAPV PPPPQPLLSV PFNSPFLFAA PSLPSSSSSS 60 SLHPPLETQI LPDIDWVSLL SGQGVLGENK PMIESAVSLM AENGADQDEK GNKDKRKGSR 120 IKKASRPRFA FQTRSADDIL DDGYRWRKYG QKAVKNSNYP RSYYRCTHHT CNVKKQVQRL 180 SKDTSIVVTT YEGIHNHPCE KLMETLTPLL KQMQFLSRF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-24	130	197	7	74	Probable WRKY transcription factor 4
2lex_A	1e-24	130	197	7	74	Probable WRKY transcription factor 4
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00317	DAP	Transfer from AT2G46130	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF031103	1e-108	KF031103.1 Gossypium hirsutum WRKY transcription factor 66 (WRKY66) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021279718.1	1e-123	probable WRKY transcription factor 43
TrEMBL	A0A061DST4	1e-162	A0A061DST4_THECC; WRKY DNA-binding protein 56
STRING	EOX95854	1e-163	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM509	28	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46130.1	1e-58	WRKY DNA-binding protein 43

Link Out ? help Back to Top
Phytozome	Thecc1EG005256t1
Entrez Gene	18614069

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]