PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005447t1
Common NameTCM_005447
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family TCP
Protein Properties Length: 355aa    MW: 37370.5 Da    PI: 9.7895
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005447t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1211.4e-37701672100
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaks 93 
                       a+k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++    +   +  + s+++ ++ 
  Thecc1EG005447t1  70 APKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsV--NGTLKIPTTSNANPEPG 160
                       799*************************************************************8888844421..11111111111111111 PP

               TCP  94 aakskks 100
                       ++++kk+
  Thecc1EG005447t1 161 DQSKKKR 167
                       1111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.9E-3175159IPR005333Transcription factor, TCP
PROSITE profilePS5136927.14176130IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MAAIQKQEVE EDEDTRAVDL SINGGGDAAA AASKNPKEEP DTEAAIGVMP MAVHVPSAIP  60
MPLVTAPPTA PKRASTKDRH TKVEGRGRRI RMPATCAARI FQLTRELGHK SDGETIRWLL  120
EHAEPAIIAA TGTGTVPAIA MSVNGTLKIP TTSNANPEPG DQSKKKRKRP ANSEYVDIND  180
AVSVSSGLAP VITSQRRQQQ QQLPPVLPQG LVPVWAIPSN AVVPGAFFMV PPMTSVAGPS  240
TEPHLFTFPA TATPLINISA RPISSFVSAM QHGVSIAATP GQLQSNVAVT SSTLPVSKTV  300
KTTSVMAPSS SSAATITSSS ASTTTTTTTQ MLRDFSLEIY DKQELQFMTR PSKH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051964.20.0PREDICTED: transcription factor TCP9
SwissprotO646473e-99TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A061DVP10.0A0A061DVP1_THECC; TCP family transcription factor
STRINGEOX961210.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.13e-92TCP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]