PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005706t1
Common NameTCM_005706
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 230aa    MW: 25227.3 Da    PI: 6.5292
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005706t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-2093144256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr+++ +g ++AeIrdp++ng  +r++lg++ t+e+Aa a+++a+ k++g+
  Thecc1EG005706t1  93 HYRGVRRRP-WGTYAAEIRDPKKNG--ARVWLGTYETPEDAALAYDRAAFKMRGA 144
                       6********.***********9998..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-3293152IPR001471AP2/ERF domain
SMARTSM003808.3E-3793157IPR001471AP2/ERF domain
PROSITE profilePS5103223.51293151IPR001471AP2/ERF domain
CDDcd000182.43E-3093153No hitNo description
PfamPF008474.1E-1493143IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2293152IPR016177DNA-binding domain
PRINTSPR003671.1E-1294105IPR001471AP2/ERF domain
PRINTSPR003671.1E-12133153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MYGGNTSGFD LSLLESIRQY LLEDELPLYD QIGCSKTDAI NVDQWVTFDQ LFDAAETAAV  60
GVSVPSCEVI TSELGTATTA TAPKLQALPK KVHYRGVRRR PWGTYAAEIR DPKKNGARVW  120
LGTYETPEDA ALAYDRAAFK MRGAKAKLNF PHLIGSDQVE PVRVTNNKRR SSSQSSAQSA  180
SCSSYISDNG TPKSKRRMIS EINSAVKTEL GSESELELTP TDFWQTVFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-3193151260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-3190158270ATERF1
3gcc_A3e-3190158270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052303.21e-171PREDICTED: ethylene-responsive transcription factor 1
SwissprotQ404791e-42ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A061DUP91e-170A0A061DUP9_THECC; Ethylene-responsive element binding factor 13, putative
STRINGEOX964601e-171(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.16e-43ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]