PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005892t1
Common NameTCM_005892
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 332aa    MW: 36827.4 Da    PI: 7.6583
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005892t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.51.4e-07170189120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++Cp Cgk+F+r  nL+ H+
  Thecc1EG005892t1 170 FSCPVCGKTFNRYNNLQMHM 189
                       89*****************9 PP
2zf-C2H212.20.00054254276123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +C k F  k + ++H +++
  Thecc1EG005892t1 254 FMCRKCEKAFAVKGDWRTHEKNC 276
                       89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.9E-6163192No hitNo description
Gene3DG3DSA:3.30.160.602.5E-6170189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.489170197IPR007087Zinc finger, C2H2
SMARTSM003550.01170192IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
SuperFamilySSF576674.82E-6238274No hitNo description
Gene3DG3DSA:3.30.160.604.6E-5241274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035578254274IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MTDPACSNFF NGCLNFMPLN PHYTSFTTPN HPNPSSQAHT SNIIINKSSI QGQSTYPSSP  60
PRKEALPLIN YLSPTGQEEN EPSSSSVEED KNMSKEESLF SSTVDDEAVT VALHIGLPSP  120
SNSDLRFRVS PSADVTDKGE NGSAVSGYPL SKGQYWIPTP TQILVGPTQF SCPVCGKTFN  180
RYNNLQMHMW GHGSQYRKGP DSLRGSQPTA MLRLPCYCCA PGCKHNIDHP RARPLKDFRT  240
LQTHYKRKHG IKPFMCRKCE KAFAVKGDWR THEKNCGKIW YCICGSDFKH KRSLKDHIKA  300
FGPGHGAFGI DSLEEDDEPA SEFEVDCESS M*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052543.20.0PREDICTED: zinc finger protein WIP2
SwissprotQ9SVY11e-125ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A061DVJ50.0A0A061DVJ5_THECC; TRANSPARENT TESTA 1 protein, putative
STRINGEOX967000.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-124C2H2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  3. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]