PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006172t1
Common NameTCM_006172
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 120aa    MW: 13837.2 Da    PI: 10.9296
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006172t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.7e-17495188
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrs 88
                      f+k l++ d    +rl++p k +  h   ++++  ++  ++d esg +W++++  rkks+      vltkGW+eFv +++L++gD v F+  +++
  Thecc1EG006172t1  4 FLKNLKKTDLE--KRLTIPSKSLH-HfpPLSNKHMVDFAVKDeESGHVWKFRIYTRKKSNNnflkPVLTKGWREFVCSKQLRVGDRVAFYSAEEQ 95
                      56666444443..56********5.55*555567789999998999*******6688888788889999*********************54332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.1092107IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-14395IPR015300DNA-binding pseudobarrel domain
CDDcd100173.05E-15390No hitNo description
Gene3DG3DSA:2.40.330.102.0E-19396IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-54109IPR003340B3 DNA binding domain
PfamPF023623.8E-13494IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MAIFLKNLKK TDLEKRLTIP SKSLHHFPPL SNKHMVDFAV KDEESGHVWK FRIYTRKKSN  60
NNFLKPVLTK GWREFVCSKQ LRVGDRVAFY SAEEQAGAVK YRVKVQRPLK IFGASVFPS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021286425.14e-76B3 domain-containing transcription factor NGA4-like
TrEMBLA0A061DYA26e-83A0A061DYA2_THECC; AP2/B3-like transcriptional factor family protein, putative
STRINGEOX970661e-83(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16920512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.12e-10related to ABI3/VP1 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]