PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006224t1
Common NameTCM_006224
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 172aa    MW: 19253.8 Da    PI: 10.5314
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006224t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.75.6e-1560154197
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f k+lt+ dv k+  l++p k+++++    g      +  +  desg++W +++++rk++    +v+ +GW eFv++n+L++ D + F+  g+
  Thecc1EG006224t1  60 FSKILTKTDVEKR--LSIPTKHLKSFpcfqG-G--HAVNFRAIDESGKVWPLQCSIRKGKYLkpVVF-RGWVEFVRSNKLEVSDKIKFY--GE 144
                       7899999999986..9*********9*9954.4..35679999***********7655443353444.6********************..78 PP

                       SEE..EEEEE CS
                B3  88 sefelvvkvf 97 
                        ++e+++kv 
  Thecc1EG006224t1 145 PGGEYMIKVK 154
                       9999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-1758148IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.36158157IPR003340B3 DNA binding domain
CDDcd100172.11E-1859155No hitNo description
SuperFamilySSF1019363.14E-1459152IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-1160153IPR003340B3 DNA binding domain
SMARTSM010192.0E-760157IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MQKNRISSLN RDKSRCLAVG NIKDKLQTCL LLSSECFPMP LIKSDSFAEK KTVVSMAIIF  60
SKILTKTDVE KRLSIPTKHL KSFPCFQGGH AVNFRAIDES GKVWPLQCSI RKGKYLKPVV  120
FRGWVEFVRS NKLEVSDKIK FYGEPGGEYM IKVKKPVKVF GAIIAYAPAH G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010223.11e-36PREDICTED: B3 domain-containing transcription factor NGA4-like
RefseqXP_011012047.11e-36PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLA0A061DWD81e-122A0A061DWD8_THECC; AP2/B3-like transcriptional factor family protein, putative
STRINGEOX971241e-123(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16093413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.15e-08B3 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]