PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006241t1
Common NameTCM_006241
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 123aa    MW: 14219.8 Da    PI: 10.9725
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006241t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.3e-16141021396
                       TT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                B3  13 sgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                       ++rl++p k ++++  ++ +  ++  ++d esgr+W++++  rkk +      vltkGW+eFv +++L+ gD v F+ ++    +++vkv
  Thecc1EG006241t1  14 EKRLTIPSKALRSFpPLSDKHMVDFAVRDeESGRVWKFRIYTRKKNNNkylkPVLTKGWREFVCSKQLRIGDRVAFY-KQAGAVKYRVKV 102
                       367************445556789999998999*******44333333577789***********************.333777777777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.9972106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-18492IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-13494IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-54112IPR003340B3 DNA binding domain
CDDcd100176.94E-166104No hitNo description
PfamPF023624.6E-1314102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MAIVLKNLKK TDIEKRLTIP SKALRSFPPL SDKHMVDFAV RDEESGRVWK FRIYTRKKNN  60
NKYLKPVLTK GWREFVCSKQ LRIGDRVAFY KQAGAVKYRV KVERPLKIFG ASVFPSQESV  120
VC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021287100.14e-72B3 domain-containing transcription factor NGA4-like
TrEMBLA0A061DXM13e-84A0A061DXM1_THECC; AP2/B3-like transcriptional factor family protein, putative
STRINGEOX971425e-85(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16920512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.14e-10B3 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]