PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006249t1

Common Name

TCM_006249

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

TCP

Protein Properties

Length: 550aa MW: 57834.2 Da PI: 7.5146

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006249t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	133.6	1.8e-41	169	296	3	115
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ Thecc1EG006249t1 169 PVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksap 261 5699****************************************************************9998888888888855555555556 PP TCP 89 .........................kaaksaakskksqksaasalnlakesr 115 + l ++++++ Thecc1EG006249t1 262 hsfhgalalashhhhhpyeegfaqsA-----------------LLGFHHQQQ 296 66666666544444444444443220.................222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.2E-41	173	336	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.496	174	228	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence Send to blast
MELTDLQSNK QSNNSNSNNN NSSNNSTEPH HQSLHHHLHH HHHHHLQHQK QSPSPQLVVP 60 FDGTRSSGPS AGNPFNMGSI SHPHHHHHLL LHPASSTTTT TTTPPLTSSS SSSSSASTTT 120 TNPPQLVDAS LAIATRSTSV NVDSTKKNQP NLPLSSTTTT TTTTVANPPV KRSTKDRHTK 180 VDGRGRRIRM PATCAARVFQ LTRELGHKSD GETIEWLLQQ AEPAIIAATG TGTIPANFST 240 LNVSLRSSGS TLSAPPSKSA PHSFHGALAL ASHHHHHPYE EGFAQSALLG FHHQQQQQQQ 300 QQQLLTADQI AEALPGAAGG DSGNSSENYM RKRFREDLFK DDNQQQGESG SGGGGGSGDG 360 SPIKAFKSGL GQLPKPQQDA GSSGLLRPSN ILPATAMWAV APAPSSGAGS TFWMLPVTAG 420 AGGPSVATGA SGAGPSEPQM WPFGTPGPAS GNTLQAPLHF VPRFNLPGSV EFQGGRPSPL 480 QLGSMLMQQQ PSQHLGLGMS ESNLGMLAAL NAYSRGGSNI NSEQNNPLEH HQHQPQGTDS 540 GDEDPNNSQ*

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence Send to blast

MELTDLQSNK QSNNSNSNNN NSSNNSTEPH HQSLHHHLHH HHHHHLQHQK QSPSPQLVVP  60
FDGTRSSGPS AGNPFNMGSI SHPHHHHHLL LHPASSTTTT TTTPPLTSSS SSSSSASTTT  120
TNPPQLVDAS LAIATRSTSV NVDSTKKNQP NLPLSSTTTT TTTTVANPPV KRSTKDRHTK  180
VDGRGRRIRM PATCAARVFQ LTRELGHKSD GETIEWLLQQ AEPAIIAATG TGTIPANFST  240
LNVSLRSSGS TLSAPPSKSA PHSFHGALAL ASHHHHHPYE EGFAQSALLG FHHQQQQQQQ  300
QQQLLTADQI AEALPGAAGG DSGNSSENYM RKRFREDLFK DDNQQQGESG SGGGGGSGDG  360
SPIKAFKSGL GQLPKPQQDA GSSGLLRPSN ILPATAMWAV APAPSSGAGS TFWMLPVTAG  420
AGGPSVATGA SGAGPSEPQM WPFGTPGPAS GNTLQAPLHF VPRFNLPGSV EFQGGRPSPL  480
QLGSMLMQQQ PSQHLGLGMS ESNLGMLAAL NAYSRGGSNI NSEQNNPLEH HQHQPQGTDS  540
GDEDPNNSQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527491	1e-100	HQ527491.1 Gossypium herbaceum clone NBRI_C_7085 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007041329.2	0.0	PREDICTED: transcription factor TCP8
Swissprot	Q9C518	2e-90	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A061DWY9	0.0	A0A061DWY9_THECC; TCP family transcription factor
STRING	EOX97160	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10218	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	5e-79	TCP family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG006249t1
Entrez Gene	18607218

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]