PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006253t1

Common Name

TCM_006253

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

ZF-HD

Protein Properties

Length: 216aa MW: 24366.8 Da PI: 4.3071

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006253t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	66.6	4.6e-21	64	116	2	56
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 ++v+Y eC++N G ++vDGC Ef++ e g +a+ C CgCHR+FHR+ Thecc1EG006253t1 64 QGVTYMECRRNVSLPAGRYSVDGCSEFLKR--EAGRENAMLCDTCGCHRSFHRKV 116 6799**********************98..6689***************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-8	66	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.5E-19	66	116	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.0E-14	67	115	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	17.525	68	116	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MLLPKLKKSR FTCFKPYHSP SSSLSIHFPL LSVMDDDNGA GHEQGQAQAN AVRRRINRQA 60 VGEQGVTYME CRRNVSLPAG RYSVDGCSEF LKREAGRENA MLCDTCGCHR SFHRKVLPTL 120 YPEATHYLVF NDIPSVRPMP QSLQPPIPLV PQPELPHEQV AESESEEEEE EEEEEEEEER 180 SGTDEESEER SELDSESEVD EVEMINGGEK DSKED*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021286447.1	6e-94	zinc-finger homeodomain protein 2-like
TrEMBL	A0A061DYQ1	1e-155	A0A061DYQ1_THECC; Uncharacterized protein
STRING	EOX97166	1e-156	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18835.1	1e-12	mini zinc finger

Link Out ? help Back to Top
Phytozome	Thecc1EG006253t1
Entrez Gene	18607222

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]