PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006254t1

Common Name

TCM_006254

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

ZF-HD

Protein Properties

Length: 168aa MW: 18159.4 Da PI: 5.9956

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006254t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	75.2	9.2e-24	37	91	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +++Y eC++N as+Gg+ +DGC f++ +++ ++al Ca CgCHR+FHR+ v Thecc1EG006254t1 37 GATYMECRRNYVASIGGYIIDGCPKFVEGGHDDEIKEALLCATCGCHRSFHRKVV 91 689***********************96666899**************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-11	38	91	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.3E-22	39	90	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.5E-19	39	89	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	20.741	40	90	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MEKARNSPDQ INNVADIQAR AGSGQGINPG SHVVEQGATY MECRRNYVAS IGGYIIDGCP 60 KFVEGGHDDE IKEALLCATC GCHRSFHRKV VLPPPHLRDT RYSIMNYLRS LPLAALQPRP 120 PTPWLMQSPI LPNCELIEGQ GSSTSPDESE SDSGDEINQA SKINKAG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022762552.1	1e-69	uncharacterized protein LOC111308491
TrEMBL	A0A061DXS4	1e-121	A0A061DXS4_THECC; Uncharacterized protein
STRING	EOX97167	1e-122	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22076	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50890.1	4e-18	homeobox protein 28

Link Out ? help Back to Top
Phytozome	Thecc1EG006254t1
Entrez Gene	18607223

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]