PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006255t1

Common Name

TCM_006255

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

ZF-HD

Protein Properties

Length: 235aa MW: 26376.9 Da PI: 8.5881

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006255t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	78.9	6.5e-25	33	84	2	58
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 e++rYkeC++NhAas G +a+DGCgEf+ + +a+ CaACgCHR+FHR+e+ Thecc1EG006255t1 33 ERIRYKECRRNHAASFGRYAFDGCGEFIGC-----NDDAFMCAACGCHRSFHRKEPP 84 679***********************98.....5689*************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-12	26	82	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.3E-20	35	83	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.7E-19	36	82	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	23.095	37	82	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	4.0E-23	142	209	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.21E-14	145	208	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.3E-20	150	206	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MAGEASKDVI KIEASEVEPI SVQRCSSLVP ETERIRYKEC RRNHAASFGR YAFDGCGEFI 60 GCNDDAFMCA ACGCHRSFHR KEPPNNLNNA ALPPPHQPMP PQKPLLAPLP LASHNGLTGE 120 TSLFPRDRNI DAGSETLSGA EVEEPKDTKK RAKRTRITME QKTKMMRFAD KLGWRPQKHD 180 DAEVQQFCEE VGITKRVFVV WLNNNRRRKD SMRSKEQAWA HAVAENNNMS AAQN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-16	154	206	21	73	ZF-HD homeobox family protein
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007041337.2	1e-176	PREDICTED: zinc-finger homeodomain protein 5
TrEMBL	A0A061E4L8	1e-176	A0A061E4L8_THECC; Homeobox 31-like protein
STRING	EOX97168	1e-176	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18668	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	4e-33	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Thecc1EG006255t1
Entrez Gene	18607224

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]