PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006258t1
Common NameTCM_006258
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 118aa    MW: 13673.9 Da    PI: 11.0351
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006258t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-15490187
                      EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87
                      f+k lt+ d  +++rl +p + +  +    g+   s++l+++d+s r W++ +++rkk+    v+++GW eF ++n+L+ gD v F+l++ 
  Thecc1EG006258t1  4 FIKRLTQTD--TNKRLAIPTNSLVYFpgfRGN--HSVELKVKDKSHRLWTFHCSIRKKRYLkPVFSSGWLEFIRSNNLRIGDKVSFRLEQG 90
                      778885555..55679******9666966444..799****************77555543699***********************9843 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.2362105IPR003340B3 DNA binding domain
SuperFamilySSF1019362.22E-15392IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-18390IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.5E-4496IPR003340B3 DNA binding domain
PfamPF023622.5E-12490IPR003340B3 DNA binding domain
CDDcd100171.38E-16490No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MEVFIKRLTQ TDTNKRLAIP TNSLVYFPGF RGNHSVELKV KDKSHRLWTF HCSIRKKRYL  60
KPVFSSGWLE FIRSNNLRIG DKVSFRLEQG HVSGVEYGIA VQRKIRLLGK DVWADVL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021286448.13e-75AP2/ERF and B3 domain-containing transcription factor RAV1-like
TrEMBLA0A061DWZ87e-81A0A061DWZ8_THECC; Uncharacterized protein
STRINGEOX971701e-81(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16093413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.14e-06related to ABI3/VP1 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]