PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006259t1
Common NameTCM_006259
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 118aa    MW: 13771.1 Da    PI: 10.8993
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006259t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.71e-13491187
                      EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS
                B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld.gr 87
                      f+k lt+ d  k  rl +p + +  +    g+   s++l+++d+s r W++++++rkk+    v+++GW eF + n+L+ gD v  +l+ g+
  Thecc1EG006259t1  4 FIKRLTQTDIDK--RLAIPTNSLVYFpgfRGN--HSVELKVKDKSHRLWTFRCSIRKKRYLkPVFSSGWLEFIRNNNLRIGDKVSVRLEqGH 91
                      677776666665..599**9999655966444..799****************77555543699********************99987444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.1072105IPR003340B3 DNA binding domain
CDDcd100174.97E-16390No hitNo description
Gene3DG3DSA:2.40.330.104.1E-17390IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-13390IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0038496IPR003340B3 DNA binding domain
PfamPF023622.5E-10489IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MELFIKRLTQ TDIDKRLAIP TNSLVYFPGF RGNHSVELKV KDKSHRLWTF RCSIRKKRYL  60
KPVFSSGWLE FIRNNNLRIG DKVSVRLEQG HLSGVEYGIE VQRKIRLLGK DVWADVL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021286448.12e-78AP2/ERF and B3 domain-containing transcription factor RAV1-like
TrEMBLA0A061DYQ76e-80A0A061DYQ7_THECC; Uncharacterized protein
STRINGEOX971711e-80(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16093413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.16e-07related to ABI3/VP1 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]