PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006262t1
Common NameTCM_006262
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 185aa    MW: 21448.1 Da    PI: 10.545
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006262t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.36.4e-14490187
                      EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87
                      f k lt+ d +k  rl +p + +  +    g+   s++l+++d+s r W++++++rkk+    v+++GW eF  +n L+ gD v F+l++ 
  Thecc1EG006262t1  4 FTKRLTQTDINK--RLAIPTNSLVYFpgfRGN--HSVELKVKDKSHRLWRFRCSIRKKRYLkPVFSSGWPEFTFSNSLRIGDKVSFRLEQG 90
                      566675555554..699****99666966444..799****************77555543699***********************9853 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.3892105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-18390IPR015300DNA-binding pseudobarrel domain
CDDcd100179.52E-15390No hitNo description
SuperFamilySSF1019361.83E-14393IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.4E-5496IPR003340B3 DNA binding domain
PfamPF023621.1E-10490IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MELFTKRLTQ TDINKRLAIP TNSLVYFPGF RGNHSVELKV KDKSHRLWRF RCSIRKKRYL  60
KPVFSSGWPE FTFSNSLRIG DKVSFRLEQG HVTGVEYGIE VQRKIRLLGK DVWADGFSGI  120
LIWIWMFFFL SVFTGLLGRV CYVPEDFFLL LSIISSNPFC SNLPFTEAAS QRLRDHISLF  180
SLLI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021286448.14e-70AP2/ERF and B3 domain-containing transcription factor RAV1-like
TrEMBLA0A061DXS71e-131A0A061DXS7_THECC; Uncharacterized protein
STRINGEOX971721e-132(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16093413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-06B3 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]