PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006270t1
Common NameTCM_006270
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 109aa    MW: 12245.9 Da    PI: 9.6305
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006270t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.63.8e-12141011499
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE-S CS
                B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfrk 99 
                       ++l++ k+f  e   + + + +++++de g  W++k++++ + +  vl++ W +Fv+ n +++gD+v +  +  ++ + +e++v v+r+
  Thecc1EG006270t1  14 KQLTITKNFDGEPFPSAAHGGKMRVRDEPGALWTFKYKVKSTNE-RVLSGHWMQFVQNNSVRVGDTVAIDKNdgWSsEAAEYKVEVIRR 101
                       5677777775555333445568***************6544444.689*******************9983324555777777777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.6591102IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-11780IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-111384IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-914101IPR003340B3 DNA binding domain
CDDcd100172.04E-1014100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MAIVSKMIVE GDMKQLTITK NFDGEPFPSA AHGGKMRVRD EPGALWTFKY KVKSTNERVL  60
SGHWMQFVQN NSVRVGDTVA IDKNDGWSSE AAEYKVEVIR RVQNRSDQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A061E4M68e-75A0A061E4M6_THECC; Uncharacterized protein
STRINGEOX971781e-75(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-06RAV family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]