PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006272t1
Common NameTCM_006272
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 104aa    MW: 11638.2 Da    PI: 9.6589
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006272t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.58.4e-12986987
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3  9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                      d +  ++l++ k+f  e   + + + ++++ de+   W+++++++ +  + vl++ W++Fv+ n +++gD+v +  ++r
  Thecc1EG006272t1  9 DEGDMKQLTITKNFDGEPFPSAAHGGKMRVIDEQRTLWRFTYKVKSTN-KRVLSGPWEQFVQNNSVRVGDTVAIDNNDR 86
                      666777899999996666444455669***************654444.4689*******************9875444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.1511102IPR003340B3 DNA binding domain
PfamPF023623.3E-8884IPR003340B3 DNA binding domain
CDDcd100171.08E-99100No hitNo description
Gene3DG3DSA:2.40.330.101.6E-101182IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-91480IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MAIVSKMIDE GDMKQLTITK NFDGEPFPSA AHGGKMRVID EQRTLWRFTY KVKSTNKRVL  60
SGPWEQFVQN NSVRVGDTVA IDNNDRWSSG AAEYKIEVIS RGS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A061DWN01e-70A0A061DWN0_THECC; Uncharacterized protein
STRINGEOX971792e-71(Theobroma cacao)
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]