PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006275t1
Common NameTCM_006275
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 102aa    MW: 11505 Da    PI: 9.6898
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006275t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.88.3e-13798797
                      .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SSSEE..EEEEE CS
                B3  7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..grsefelvvkvf 97
                      + d    ++l++  +f +e   + +++  +t++de+g  W++k++  k++++ vl++ W +Fv+ n++++gD v ++ +  ++se+e+++ v+
  Thecc1EG006275t1  7 TIDGDDINQLTITDRFNAEPFPSAASGGAMTVKDEQGLLWTFKYK-VKSRNKRVLSGHWVHFVRNNRVRVGDRVAISNNdgWSSEAEYKIEVL 98
                      457888899*******8888555667779***************5.44444579******************999994432337777777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.5741101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-12384IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-12381IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-10377No hitNo description
PfamPF023622.8E-10898IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MAIFEKTIDG DDINQLTITD RFNAEPFPSA ASGGAMTVKD EQGLLWTFKY KVKSRNKRVL  60
SGHWVHFVRN NRVRVGDRVA ISNNDGWSSE AEYKIEVLRG F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632671.12e-24PREDICTED: uncharacterized protein LOC108475196
TrEMBLA0A061DYR37e-69A0A061DYR3_THECC; Uncharacterized protein
STRINGEOX971811e-69(Theobroma cacao)
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]