PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006324t1

Common Name

TCM_006324

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

M-type_MADS

Protein Properties

Length: 244aa MW: 27699.8 Da PI: 9.3153

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006324t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.8	4.5e-21	45	91	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i k qvtfskRr+g++KKA+EL++LC+++va+++fs+ k+y + Thecc1EG006324t1 45 IAKKNHLQVTFSKRRTGLFKKASELCTLCAVDVAIMVFSPGKKVYSF 91 6677888**************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.9E-28	35	94	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.45E-25	35	108	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.217	35	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-15	37	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.1E-23	44	91	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-15	57	72	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-15	72	93	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MCFQDQTHIA HKPIHTDLVS NSSFDFFTMT KNSNMGRQRI TMAKIAKKNH LQVTFSKRRT 60 GLFKKASELC TLCAVDVAIM VFSPGKKVYS FGHPRVESIV DRLLTRTPPL RSSTAHQLFE 120 AHQNASIHEL NIRLTQLLEQ LEIEKRRGDA LDNIRKAGLN QCWWQAPIDE LGLNELERLR 180 IALEEVKQNA AKQANKVLLE SADHKRWQFL AVNGTGHANP FENKDNCICR IIDQAYGYGD 240 GLF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017970312.1	1e-157	PREDICTED: agamous-like MADS-box protein AGL62
Swissprot	Q9FKK2	7e-49	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	A0A061DWS6	0.0	A0A061DWS6_THECC; Agamous-like MADS-box protein A, putative
STRING	EOX97244	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	3e-51	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Thecc1EG006324t1
Entrez Gene	18607276

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]