PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006325t1

Common Name

TCM_006325

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

M-type_MADS

Protein Properties

Length: 219aa MW: 24228.1 Da PI: 5.2589

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006325t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72.4	3.9e-23	15	58	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++s rqvtfskRrng++KKA+EL+vLC+a++ +i+fs++gk Thecc1EG006325t1 15 KLEDESSRQVTFSKRRNGLFKKASELCVLCGANIGIIVFSPKGK 58 6799***************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.5E-34	6	65	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.464	6	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.14E-29	7	77	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.98E-39	7	78	No hit	No description
PRINTS	PR00404	2.6E-21	8	28	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.6E-25	16	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-21	28	43	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-21	43	64	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MAKATRGRQK IQIKKLEDES SRQVTFSKRR NGLFKKASEL CVLCGANIGI IVFSPKGKPF 60 CFGHPNVDAV VDRYLSGNPT LHGEEDSETS CDGTPCFEEF DEECKEAMEK LEEEKRRSKE 120 IEKEKEERKK KGQFWWDEPI DNMGVEELEA YVKAMEELRK NVARRANELM GDVFAAATVA 180 NSGGLGTGFA DQNGGFGYGD DAFHFGHGHG LGFGGGQF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	1e-16	7	78	1	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	1e-16	7	78	1	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	1e-16	7	78	1	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	1e-16	7	78	1	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A	2e-16	7	78	1	72	Myocyte-specific enhancer factor 2A
3kov_B	2e-16	7	78	1	72	Myocyte-specific enhancer factor 2A
3kov_I	2e-16	7	78	1	72	Myocyte-specific enhancer factor 2A
3kov_J	2e-16	7	78	1	72	Myocyte-specific enhancer factor 2A
3p57_A	2e-16	7	78	1	72	Myocyte-specific enhancer factor 2A
3p57_B	2e-16	7	78	1	72	Myocyte-specific enhancer factor 2A
3p57_C	2e-16	7	78	1	72	Myocyte-specific enhancer factor 2A
3p57_D	2e-16	7	78	1	72	Myocyte-specific enhancer factor 2A
3p57_I	2e-16	7	78	1	72	Myocyte-specific enhancer factor 2A
3p57_J	2e-16	7	78	1	72	Myocyte-specific enhancer factor 2A
5f28_A	2e-16	7	78	2	73	MEF2C
5f28_B	2e-16	7	78	2	73	MEF2C
5f28_C	2e-16	7	78	2	73	MEF2C
5f28_D	2e-16	7	78	2	73	MEF2C
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	130	KRRSKEIEKEKEERKKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021300301.1	1e-137	agamous-like MADS-box protein AGL62
TrEMBL	A0A061DX51	1e-159	A0A061DX51_THECC; Mads box protein, putative
STRING	EOX97245	1e-159	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	3e-38	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	Thecc1EG006325t1
Entrez Gene	18607277

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]