PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006432t1

Common Name

TCM_006432

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bZIP

Protein Properties

Length: 332aa MW: 35892.4 Da PI: 7.9498

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006432t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.2	8.9e-14	204	260	4	60
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 +++rr++kNRe+A rsR+RK+a++ eLe v +Le+e ++L e el+ke k Thecc1EG006432t1 204 QQKQRRMIKNRESAARSRERKQAYTVELESLVTQLEEEQTRLLREEAELQKERFKQL 260 689**************************************9888878877765544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.4E-13	198	260	No hit	No description
SMART	SM00338	2.5E-12	201	265	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.392	203	255	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.7E-12	203	262	IPR004827	Basic-leucine zipper domain
CDD	cd14707	8.77E-21	205	254	No hit	No description
SuperFamily	SSF57959	4.31E-10	205	257	No hit	No description
PROSITE pattern	PS00036	0	208	223	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MASSKVITTT SATNPDVPRQ PSLCSSLSTL LADLQNQQSN QSQSQNGSMS MDDLLKNIYS 60 SPPPPPTTSE AHAQFPGASI SREGSFSLPK DVANKSVDEV WKEIVAGGGD QRQGGPTEEM 120 TLEDFLTKAG AVREEDVRGV VNQVGVGAGV YAVDPAVING GGSQFSTFGN NGGVDHQRLV 180 APAGGGARGK RRAVEEPPLD KATQQKQRRM IKNRESAARS RERKQAYTVE LESLVTQLEE 240 EQTRLLREEA ELQKERFKQL MENLIPVEEK RRPPRVLRRV HSMQCNVLTA SKLTPSTSTI 300 LTIITATVKF CSEATTSSTV GVSWLICIDG K*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269\|PubMed:8146148}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007041584.2	0.0	PREDICTED: G-box-binding factor 4
Swissprot	P42777	3e-41	GBF4_ARATH; G-box-binding factor 4
TrEMBL	A0A061DX74	0.0	A0A061DX74_THECC; Basic-leucine zipper transcription factor family protein, putative isoform 1
STRING	EOX97415	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	9e-30	bZIP family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG006432t1
Entrez Gene	18607377

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]