PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006441t1

Common Name

TCM_006441

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 448aa MW: 50575.2 Da PI: 5.7361

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006441t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.3	3.6e-22	87	181	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt ++v++Li++ ++++e+ ++++ +k ++W+ vsk+m erg+++sp+qC++k++nlnk y+++++ +++ +++++++ ++ Thecc1EG006441t1 87 KWTGKMVKLLITILSYIGEDPSTDCvgsqrkmssllRKLGKWKCVSKVMVERGYHVSPQQCEDKFNNLNKTYRRLNDLLGRGtSCKVVENPKL 179 7********************988889999999999*****************************************955888888777 PP trihelix 82 fd 83 +d Thecc1EG006441t1 180 LD 181 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-19	85	209	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MEGQPSPGGK MLQGRDYGCQ DLQGSMKPSH EQKPCMFELP PVSGLVENEG HENMVIEDDV 60 TNYAEQGTLE HNEVGKSEDG SPWQRMKWTG KMVKLLITIL SYIGEDPSTD CVGSQRKMSS 120 LLRKLGKWKC VSKVMVERGY HVSPQQCEDK FNNLNKTYRR LNDLLGRGTS CKVVENPKLL 180 DIIDLSEKGK EDVRKILTSK HLFFEEMCSY HNGNRLYLPH DPDLLQCLLL ILKNENDNEL 240 YDLSQPGLYG IDKKAGVLAE GDAAEDSGAT SGFPAFSARL RLTNENEIAG FGNTSKSLDS 300 NQTLDDQGDL AEYNGTNSGF SAVSAMWLKQ TNENQAAGLG NPLKPWDCNQ NSDAQPLYNF 360 AHQNLSCPEG NEADRSQNQQ MAYRMYQLEM QKLQLKSKML KLEKQRFKWQ CNSLKQDMEV 420 DRMRMENKCL KLGNECIAME LKQRRIN*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MEGQPSPGGK MLQGRDYGCQ DLQGSMKPSH EQKPCMFELP PVSGLVENEG HENMVIEDDV  60
TNYAEQGTLE HNEVGKSEDG SPWQRMKWTG KMVKLLITIL SYIGEDPSTD CVGSQRKMSS  120
LLRKLGKWKC VSKVMVERGY HVSPQQCEDK FNNLNKTYRR LNDLLGRGTS CKVVENPKLL  180
DIIDLSEKGK EDVRKILTSK HLFFEEMCSY HNGNRLYLPH DPDLLQCLLL ILKNENDNEL  240
YDLSQPGLYG IDKKAGVLAE GDAAEDSGAT SGFPAFSARL RLTNENEIAG FGNTSKSLDS  300
NQTLDDQGDL AEYNGTNSGF SAVSAMWLKQ TNENQAAGLG NPLKPWDCNQ NSDAQPLYNF  360
AHQNLSCPEG NEADRSQNQQ MAYRMYQLEM QKLQLKSKML KLEKQRFKWQ CNSLKQDMEV  420
DRMRMENKCL KLGNECIAME LKQRRIN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007041596.2	0.0	PREDICTED: uncharacterized protein LOC18607386
TrEMBL	A0A061DYC5	0.0	A0A061DYC5_THECC; Uncharacterized protein
STRING	EOX97427	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22149	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-68	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Thecc1EG006441t1
Entrez Gene	18607386

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]