PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006442t1

Common Name

TCM_006442

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 272aa MW: 31680.2 Da PI: 9.6182

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006442t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.6	2.1e-20	1	85	6	78
trihelix 6 evlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 +v++Li++++++ee ++++ ++ ++W+ vsk+m +rg+++sp+qC++k+++lnkryk++++ +++ ++++ ++ Thecc1EG006442t1 1 MVKLLINVVSYVEEGASSDCmggvrrkqfmlQRIGKWKCVSKVMVKRGYHVSPQQCEDKFNDLNKRYKRCNDFLGRGtSCKVAEN 85 699************99889999999999******************************************9944666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.4E-15	1	84	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MVKLLINVVS YVEEGASSDC MGGVRRKQFM LQRIGKWKCV SKVMVKRGYH VSPQQCEDKF 60 NDLNKRYKRC NDFLGRGTSC KVAENSELLD TKYLSDKAKE EVKKILSSKN LFNEEMCSYH 120 KGNRLHLPHD PEVQRSSHLP LRCRDNKEPN QSRQNKSDDD CDKGQQGAGA DDQIEETGDN 180 GGTPRFSELS LKSKSDGLQE QWMAFRLLQL KEQKLYIQVQ KLELEKQRSK WQRVNWYNNR 240 NLDKMRLENQ CMKFENKCLA FELKRKKISS V*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007041597.2	0.0	PREDICTED: uncharacterized protein LOC18607387
TrEMBL	A0A061E577	0.0	A0A061E577_THECC; Sequence-specific DNA binding transcription factors, putative
STRING	EOX97428	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28209	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-81	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Thecc1EG006442t1
Entrez Gene	18607387

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]