PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006783t1

Common Name

TCM_006783

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

DBB

Protein Properties

Length: 262aa MW: 29305.1 Da PI: 8.0191

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006783t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.7	1e-07	51	81	4	34
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 + C+ +e+ ++lfC ++ lC++C ++ H Thecc1EG006783t1 51 TLCDVCESAAAILFCAADEAALCRSCDEKVH 81 68**************************998 PP
2	zf-B_box	28	4.4e-09	100	139	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++Ce +++ lC +C + H g H Thecc1EG006783t1 100 DVPRCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtH 139 5799**************************9995544455 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.296	48	95	IPR000315	B-box-type zinc finger
SMART	SM00336	1.4E-10	48	95	IPR000315	B-box-type zinc finger
CDD	cd00021	1.03E-6	51	93	No hit	No description
Pfam	PF00643	4.4E-6	51	82	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.973	99	144	IPR000315	B-box-type zinc finger
SMART	SM00336	8.4E-10	99	144	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.6E-7	100	133	IPR000315	B-box-type zinc finger
CDD	cd00021	5.73E-7	102	132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0010100	Biological Process	negative regulation of photomorphogenesis
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MKKEEKEVED KWRVRDLHTA AIFRSVEECL RSEERRSKRE ANRKKKNRMR TLCDVCESAA 60 AILFCAADEA ALCRSCDEKV HMCNKLASRH VRVGLADPSD VPRCDICENA PAFFYCEVDG 120 SSLCLQCDMI VHVGGKRTHG RYLLLRQRVE FPGDKPGRLD ELGLQTLDPN EVRKDKNQQQ 180 PKLAARENQQ NHRVSPVPVL DGNSDGDGKV GNKLIDLNAK PQRVHGQAST NQEQGMDISS 240 GNNHDSSSVV PVGSFKREPD K*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017970899.1	1e-157	PREDICTED: B-box zinc finger protein 19
Swissprot	C0SVM5	1e-90	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	A0A061E6F9	0.0	A0A061E6F9_THECC; B-box type zinc finger family protein
STRING	EOX97858	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2168	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	5e-93	DBB family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG006783t1
Entrez Gene	18607689

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]