PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006816t1

Common Name

TCM_006816

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

SRS

Protein Properties

Length: 212aa MW: 23348.4 Da PI: 8.9855

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006816t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	182.3	2e-56	12	144	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 g+++CqdCGnqakkdCa++RCRtCC+s+gf+C+th+kstWvpa++rr+r+qql++ +++ + +++kr re + s Thecc1EG006816t1 12 GGTRCQDCGNQAKKDCAYMRCRTCCRSKGFECQTHIKSTWVPAYRRRQRHQQLSSVPQQR--HLPIHNPKRLRE----------------NPS 86 7789*******************************************99998874433..233333444443................233 PP DUF702 97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + le ++P+ev s+a frcvrvss+dd+ +++aYqt v+igGhvfkGiLydqG++e Thecc1EG006816t1 87 LTGLELGNFPAEVTSPATFRCVRVSSIDDAADQYAYQTIVNIGGHVFKGILYDQGPAE 144 34567788*********************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.4E-58	13	143	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.6E-27	16	57	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	9.4E-28	95	142	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MMMMMRQGGG FGGTRCQDCG NQAKKDCAYM RCRTCCRSKG FECQTHIKST WVPAYRRRQR 60 HQQLSSVPQQ RHLPIHNPKR LRENPSLTGL ELGNFPAEVT SPATFRCVRV SSIDDAADQY 120 AYQTIVNIGG HVFKGILYDQ GPAEGHHHTV GECSSRETQQ PNQINAAALT TATTTTSTTS 180 VAAETLLPFA YASPFNAFMS AGTQFFLHPK S*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007042072.2	1e-151	PREDICTED: protein SHI RELATED SEQUENCE 1
Swissprot	Q9SD40	2e-65	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A061E6J8	1e-158	A0A061E6J8_THECC; Lateral root primordium protein-related
STRING	EOX97903	1e-159	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9188	26	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-59	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Thecc1EG006816t1
Entrez Gene	18607716

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]