PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006875t1
Common NameTCM_006875
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 140aa    MW: 16017.1 Da    PI: 8.4593
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006875t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.34.8e-101356344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      +WT+   +l+ +a +++ ++   +W+ +a+ +g g+t++++k ++
  Thecc1EG006875t1 13 SWTAKQNKLFEKALAKYDKDtpdRWHNVAKAVG-GKTAEEVKRHY 56
                      7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.082964IPR017884SANT domain
SMARTSM007172.5E-91062IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-61366IPR009057Homeodomain-like
CDDcd001677.79E-81356No hitNo description
SuperFamilySSF466899.79E-131367IPR009057Homeodomain-like
PfamPF002497.0E-81356IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MASSSLQSRD SVSWTAKQNK LFEKALAKYD KDTPDRWHNV AKAVGGKTAE EVKRHYEILV  60
EDLKHIESGR VPIPNYRSTG NADEEERYNL HDFVGNFFQS LCNSYHPMIA KLQKVAGAPK  120
ICLKPADWSQ HYPLFCWYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-34190190RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970206.14e-58PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1735e-36RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A061E6U21e-101A0A061E6U2_THECC; DnaJ subfamily C member 2
STRINGEOX980081e-102(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-38RAD-like 6
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]