PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006883t1
Common NameTCM_006883
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 157aa    MW: 17364.6 Da    PI: 8.4436
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006883t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.3e-081257245
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      g+WT+   + + +a + + ++   +W  +a+ +g g+t++++k ++ 
  Thecc1EG006883t1 12 GSWTAKQNKDFERALAVYDKDtpdRWYNVAKAVG-GKTAEEVKRHYE 57
                      89********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.312964IPR017884SANT domain
SMARTSM007171.0E-61062IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-51266IPR009057Homeodomain-like
SuperFamilySSF466896.28E-121268IPR009057Homeodomain-like
PfamPF002496.5E-61257IPR001005SANT/Myb domain
CDDcd001675.79E-61460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MASSSMSSRG SGSWTAKQNK DFERALAVYD KDTPDRWYNV AKAVGGKTAE EVKRHYELLV  60
QDVKHIESGQ VPFPNYRTSA GNSRGNASDE EKNLIPDVLF HVAPITLSFK PPELIFLSTS  120
LLPSDDEKYG AQLRNGLASP TIKIHCHRLL VYQMSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-38792386RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970184.12e-57PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB83e-39RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A061E0401e-113A0A061E040_THECC; Homeodomain-like superfamily protein
STRINGEOX980171e-114(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-41RAD-like 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]