PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006951t1
Common NameTCM_006951
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 116aa    MW: 12934.1 Da    PI: 9.34
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006951t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.35.6e-13491188
                      EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrs 88
                      f kvlt+ dv ++  +++p  ++ +     g     + l+++de g  W++ +  + +sg+    v+ +GW +Fv++++L+ gD+v F++++++
  Thecc1EG006951t1  4 FTKVLTNTDVQRR--FSFPDGCLPALppfRGC--HAIVLQVKDEAGILWNFAC--TIRSGMtptPVIVSGWIQFVRSKELQIGDVVFFYREDDT 91
                      8899999999886..69999999888876434..35689**************..77777767899***********************77552 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-16391IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-14392IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-184103No hitNo description
PfamPF023622.4E-10493IPR003340B3 DNA binding domain
SMARTSM010195.4E-54105IPR003340B3 DNA binding domain
PROSITE profilePS508638.75538105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MAVFTKVLTN TDVQRRFSFP DGCLPALPPF RGCHAIVLQV KDEAGILWNF ACTIRSGMTP  60
TPVIVSGWIQ FVRSKELQIG DVVFFYREDD TVTGAHYKIE VKKNSTLTSV NRKVL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021286336.12e-64auxin response factor 3-like
TrEMBLA0A061E0G12e-80A0A061E0G1_THECC; Uncharacterized protein
STRINGEOX981173e-81(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1896848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35520.19e-08auxin response factor 15
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]