PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006952t1
Common NameTCM_006952
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 134aa    MW: 14833.1 Da    PI: 7.1344
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006952t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.23.1e-13497192
                      EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sef 90
                      f kvlt+ dv ++  l++p + +++    +g+++ ++ ++  de+g +W++ +++r +     v+ kGW++Fv++++Lk+gD+vv++ +++   +
  Thecc1EG006952t1  4 FRKVLTSTDVERR--LSFPEHSLADLppfEGSPAIDFPVM-DDEDGSVWTFCCTFRAGVFPrPVIVKGWSQFVRSKELKSGDMVVLYKEEDsGAR 95
                      7899977777764..9*******999**988888875555.88**********88444322499***********************77664555 PP

                      .. CS
                B3 91 el 92
                      +l
  Thecc1EG006952t1 96 KL 97
                      55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-13395IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-163100IPR015300DNA-binding pseudobarrel domain
CDDcd100172.52E-17393No hitNo description
SMARTSM010190.00654105IPR003340B3 DNA binding domain
PfamPF023621.1E-104102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MAIFRKVLTS TDVERRLSFP EHSLADLPPF EGSPAIDFPV MDDEDGSVWT FCCTFRAGVF  60
PRPVIVKGWS QFVRSKELKS GDMVVLYKEE DSGARKLWRG LCPCTIALQA FSSNGRKGNA  120
SVKFNLLADE VIV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970335.15e-65PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A061E7744e-93A0A061E774_THECC; Uncharacterized protein
STRINGEOX981186e-94(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16093413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35520.16e-09auxin response factor 15
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]