PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006953t1
Common NameTCM_006953
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 197aa    MW: 22530 Da    PI: 10.6472
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006953t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3444.1e-1467166398
                       EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr 87 
                       k+lt+ dv+   rl++p k ++++    g+    +++    d++g+sW + l+ r++ ++     vl++GW+ +v+a+gLk++D v++++++r
  Thecc1EG006953t1  67 KELTKTDVGV--RLSFPMKSLKAFefprGK---DKVEFEAIDSTGKSWIFGLSRRNSHRHshpkPVLSSGWRAYVQAKGLKQNDRVIIHYEER 154
                       5666666665..599******999887433...346788889**********8766666588899**************************88 PP

                       .SEE..EEEEE- CS
                B3  88 .sefelvvkvfr 98 
                        +  + ++k++ 
  Thecc1EG006953t1 155 dKAMKTRFKIRA 166
                       788888888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1656163IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-1360165IPR015300DNA-binding pseudobarrel domain
CDDcd100173.00E-1566165No hitNo description
PfamPF023621.2E-1069166IPR003340B3 DNA binding domain
PROSITE profilePS508639.107103168IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MESAIHVAFN VPEKKKNLHV PNLQDSGLFK DRTISKNFAS ISTNPLFYTQ LLSLDSRCQS  60
ATMLVKKELT KTDVGVRLSF PMKSLKAFEF PRGKDKVEFE AIDSTGKSWI FGLSRRNSHR  120
HSHPKPVLSS GWRAYVQAKG LKQNDRVIIH YEERDKAMKT RFKIRAQRKS PKTLKLFGKE  180
VEIWDDLENL QPEVAA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021286333.19e-88uncharacterized protein LOC110418043
TrEMBLA0A061DZC41e-143A0A061DZC4_THECC; Uncharacterized protein
STRINGEOX981191e-144(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2224545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.12e-06RAV family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]