PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006954t1
Common NameTCM_006954
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 117aa    MW: 13718 Da    PI: 10.7295
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006954t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.83e-1615931489
                      T-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3 14 grlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89
                       rl++p   +++h   +++  +s++ +++d+  ++W ++l y+++ g+   vltkGW +Fvk n+L++gD v+F ++++ +
  Thecc1EG006954t1 15 VRLSFPTATMRKHfrlDQEGGKSVDFKVTDKYAKVWPFRL-YTRNNGHpkPVLTKGWINFVKKNKLRVGDKVIFFVHEN-G 93
                      369***********8844445789999999999*******.644444557************************96554.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100175.76E-173100No hitNo description
Gene3DG3DSA:2.40.330.106.6E-194100IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-64104IPR003340B3 DNA binding domain
SuperFamilySSF1019361.57E-16495IPR015300DNA-binding pseudobarrel domain
PfamPF023625.4E-131693IPR003340B3 DNA binding domain
PROSITE profilePS5086310.13742104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MELCSKILKR TDVEVRLSFP TATMRKHFRL DQEGGKSVDF KVTDKYAKVW PFRLYTRNNG  60
HPKPVLTKGW INFVKKNKLR VGDKVIFFVH ENGDQLGIRV QRNIKLLGQE HWAEYM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481135.11e-51PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBLA0A061DZI03e-81A0A061DZI0_THECC; Uncharacterized protein
STRINGEOX981205e-82(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17815410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.13e-09RAV family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]