PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006958t1
Common NameTCM_006958
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 121aa    MW: 13510.8 Da    PI: 5.7248
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006958t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.31.8e-10486184
                      EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkl 84
                      f k lt+ dv ks  lv+p + + ++   gg     + + + d +g+ W++ + +   ++  +++v+  GW +F  ++++++gD+v ++ 
  Thecc1EG006958t1  4 FSKLLTKTDVEKS--LVIPTSSL-DIlplGG---HLFYINVIDNTGKAWTFPCFIqqtEGIESSVVFV-GWLKFLCDKDVRVGDTVFLHQ 86
                      7788999999988..9******9.5657644...4689***************665544444447877.****************99883 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.36E-82106No hitNo description
Gene3DG3DSA:2.40.330.102.8E-9287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-9287IPR015300DNA-binding pseudobarrel domain
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MKMFSKLLTK TDVEKSLVIP TSSLDILPLG GHLFYINVID NTGKAWTFPC FIQQTEGIES  60
SVVFVGWLKF LCDKDVRVGD TVFLHQKSMD DDCTGTGTQL KIEVKRKIRL LGEDIWAAVE  120
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021286331.12e-64uncharacterized protein LOC110418041
TrEMBLA0A061E7823e-82A0A061E782_THECC; Uncharacterized protein
STRINGEOX981236e-83(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.12e-07RAV family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]