PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006961t1
Common NameTCM_006961
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 123aa    MW: 13877.9 Da    PI: 5.6937
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006961t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.81.6e-124102193
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEE...E-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFk...ldg 86 
                       f k lt+sdv ks  l +p + +++  +++ + + + + d+ g+ W++ + ++++ ++     v++ GW +F + +++++gD+v ++   ld+
  Thecc1EG006961t1   4 FSKPLTKSDVEKS--LLIPTHSFNTLPLEEGQFFNMNVVDSAGNAWTFPCFIQQNNDEikgpSVISVGWLKFLHNKDVRVGDTVFLYqisLDD 94 
                       8899*******99..9*******9999999********************7744444446889*********************999655555 PP

                       S.SEE..E CS
                B3  87 r.sefelv 93 
                       + ++++++
  Thecc1EG006961t1  95 NcTGTQFR 102
                       55555445 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-11390IPR015300DNA-binding pseudobarrel domain
CDDcd100173.65E-113107No hitNo description
SuperFamilySSF1019367.46E-10390IPR015300DNA-binding pseudobarrel domain
PfamPF023625.5E-104100IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MTLFSKPLTK SDVEKSLLIP THSFNTLPLE EGQFFNMNVV DSAGNAWTFP CFIQQNNDEI  60
KGPSVISVGW LKFLHNKDVR VGDTVFLYQI SLDDNCTGTQ FRIEVKRKIR LLGQDIWAAV  120
DQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021286332.15e-80B3 domain-containing protein Os02g0764100-like
TrEMBLA0A061E1C82e-85A0A061E1C8_THECC; Uncharacterized protein
STRINGEOX981263e-86(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.12e-07B3 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]