PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006964t1
Common NameTCM_006964
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 127aa    MW: 14806.2 Da    PI: 7.6666
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006964t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3361.3e-11690387
                      EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3  3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                      k lt+ d  k  rl++p + +       +g+  +  +l+++d+sg  W++++iy ++   + v++kGW eFv a++L+  D v F+ d++
  Thecc1EG006964t1  6 KLLTQTDIEK--RLSVPTHILH-LfpflDGD--RFADLQVKDSSGGLWTFRCIYrDGIYAKPVFSKGWLEFVYAKNLQIDDEVAFHKDKD 90
                      5554444443..5899988884.25976555..6679****************976667779***********************95554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.47E-14290No hitNo description
Gene3DG3DSA:2.40.330.108.5E-16391IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-13392IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-8690IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MKLFSKLLTQ TDIEKRLSVP THILHLFPFL DGDRFADLQV KDSSGGLWTF RCIYRDGIYA  60
KPVFSKGWLE FVYAKNLQID DEVAFHKDKD IEAAVPYRIE VKRKLMRLMG QDIWIEVEQL  120
HLYGLS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468593.11e-53PREDICTED: uncharacterized protein LOC105786621
TrEMBLA0A061DZD65e-88A0A061DZD6_THECC; Uncharacterized protein
STRINGEOX981299e-89(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2206034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.19e-10B3 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]