PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG007039t1
Common NameTCM_007039
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 259aa    MW: 29938 Da    PI: 9.1686
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG007039t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-18128217198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k +++s+v+   +l lp +f+++h  +  e+k++tl de+g+++  k+  +k++    l++GW++F  +++L +gD +vF+l+  +ef  +
  Thecc1EG007039t1 128 FVKPMLQSHVTGGFWLGLPVQFCKKHLPD--EDKMITLVDEKGEEFPTKYLAEKTG----LSGGWRGFSVDHNLVDGDALVFQLVTPTEF--K 212
                       89************************534..6679***************555555....***********************9876666..8 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                       v ++r
  Thecc1EG007039t1 213 VYIIR 217
                       88887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-23120218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-25121218IPR015300DNA-binding pseudobarrel domain
CDDcd100175.86E-29126217No hitNo description
SMARTSM010192.0E-23128219IPR003340B3 DNA binding domain
PROSITE profilePS5086312.633128219IPR003340B3 DNA binding domain
PfamPF023626.0E-17128218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVAPKATYEQ MRKRRLEENK KRMEELNLKN LSQALKNTSP KPSPMKQMKP RTPRQRVDLT  60
AVRRSSRVAD KPKPNYKDIP LEPLERPRRS HSRRNLWDRV YASDEERAYA IERAEQLEST  120
LESDYPSFVK PMLQSHVTGG FWLGLPVQFC KKHLPDEDKM ITLVDEKGEE FPTKYLAEKT  180
GLSGGWRGFS VDHNLVDGDA LVFQLVTPTE FKVYIIRAYE SEDNEDGEPG EDDKEPEPDV  240
KPDVQVLDRS AKRIRARK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007042396.20.0PREDICTED: B3 domain-containing protein At3g19184 isoform X2
SwissprotQ1G3M32e-85Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A061E0U40.0A0A061E0U4_THECC; AP2/B3-like transcriptional factor family protein, putative
STRINGEOX982270.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-81B3 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]