PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG007061t1
Common NameTCM_007061
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 319aa    MW: 34669.6 Da    PI: 8.2074
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG007061t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-20155204255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+  ++g
  Thecc1EG007061t1 155 NYRGVRQRP-WGKWAAEIRDPR----RaTRVWLGTFNTAEEAARAYDKAAIDFRG 204
                       59*******.**********82....48**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.87E-34154212No hitNo description
PROSITE profilePS5103225.146155212IPR001471AP2/ERF domain
SMARTSM003808.4E-40155218IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22155213IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-33155212IPR001471AP2/ERF domain
PfamPF008472.7E-14155204IPR001471AP2/ERF domain
PRINTSPR003673.2E-12156167IPR001471AP2/ERF domain
PRINTSPR003673.2E-12178194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MRSASQKSEN LKNISQQLPE VDTTLMQRYM KRQRLSPAPP SMSPSPPPHH RLSPEQELSV  60
MVSALKNVIT GSTPTTFTGT AVDFPFQLGA SGASTSSVAA GYNADCGNMV LQASEVMDKC  120
HVCKFDGCLG CNLFPPSQQE EKKGSTTKTK RVKKNYRGVR QRPWGKWAAE IRDPRRATRV  180
WLGTFNTAEE AARAYDKAAI DFRGPRAKLN FPFPDSSSNG TVTTTTPPPP PPGTATTTVT  240
TAAGFDQRNS SSLHVQQESE RNAISLERNA ELGFGTDQFW DGIGELDEIQ QWMMTMTDFG  300
GDNNSSDSAT TTGNANSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-23154213161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007042425.20.0PREDICTED: ethylene-responsive transcription factor ERF109
SwissprotQ9SZ062e-38EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A061E1Q70.0A0A061E1Q7_THECC; Redox responsive transcription factor 1, putative
STRINGEOX982560.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54692449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.18e-33redox responsive transcription factor 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  3. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  4. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  5. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  6. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]