PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG007138t1

Common Name

TCM_007138

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB

Protein Properties

Length: 246aa MW: 27381.6 Da PI: 8.8813

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG007138t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.8	1.4e-19	9	54	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEdell ++v +lG+++W++I++ ++ gR++k+c++rw + Thecc1EG007138t1 9 KGPWSPEEDELLRKLVLRLGPRNWSLISKSIP-GRSGKSCRLRWCNQ 54 79****************************.*********985 PP
2	Myb_DNA-binding	59.8	5.8e-19	63	105	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +v+a++++G++ W+tIar ++ gRt++ +k++w++ Thecc1EG007138t1 63 AFTPEEDETIVRAHARYGNK-WATIARLLN-GRTDNAVKNHWNST 105 79****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	27.624	4	59	IPR017930	Myb domain
SuperFamily	SSF46689	2.84E-31	6	102	IPR009057	Homeodomain-like
SMART	SM00717	3.5E-16	8	57	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-19	9	54	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-25	10	62	IPR009057	Homeodomain-like
CDD	cd00167	7.26E-15	11	53	No hit	No description
SMART	SM00717	1.7E-15	60	108	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	21.936	61	110	IPR017930	Myb domain
Pfam	PF00249	4.3E-16	63	105	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-23	63	110	IPR009057	Homeodomain-like
CDD	cd00167	4.28E-12	63	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MDQDFDRVKG PWSPEEDELL RKLVLRLGPR NWSLISKSIP GRSGKSCRLR WCNQLSPEVE 60 HRAFTPEEDE TIVRAHARYG NKWATIARLL NGRTDNAVKN HWNSTLKRKL SMEDGDSLQE 120 TGKRSAKSQR SASSNNMGSP SGSDVSDLGL NVAESERSGV STELTLGRSS NESSELNNDN 180 SSSEKVLLAQ KHEMGTKTAT VDPNLMAAMQ EMIRKEVRDC MAEFGFQSEG VRNAGFKRIG 240 IRRID*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	4e-40	8	110	3	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	2e-39	8	110	57	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	2e-39	8	110	57	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	5e-40	8	110	3	105	C-Myb DNA-Binding Domain
1msf_C	5e-40	8	110	3	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269\|PubMed:23809151, ECO:0000269\|PubMed:24894996}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress. {ECO:0000269\|PubMed:23809151}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007042527.2	1e-180	PREDICTED: transcription factor MYB44
Swissprot	O23160	1e-71	MYB73_ARATH; Transcription factor MYB73
TrEMBL	A0A061E7W2	1e-179	A0A061E7W2_THECC; Myb domain protein 73, putative
STRING	EOX98358	1e-180	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM677	28	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-69	myb domain protein 73

Link Out ? help Back to Top
Phytozome	Thecc1EG007138t1
Entrez Gene	18608005

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]