PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG007159t4

Common Name

TCM_007159

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 205aa MW: 21997.3 Da PI: 8.8452

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG007159t4	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.6	0.00053	158	196	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+ YI+ L Thecc1EG007159t4 158 ARKEKVGDRITALQQLVSPF-----GKTDTASVLHEAMGYIRFL 196 677888899******998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.477	147	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-9	154	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.3E-6	157	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MMAETDQGFE GDQGTATTTS FPQLLFGGDD DVVSLDLGQS FNYTYSSFPA HEKTPKMLCF 60 GGQQTDAEIV FGESAASTTK TATTPQRSGV TCSDSSSASS GNNNKSVKTP SKSTRKRDRG 120 RESVECTGAI VTAQPVSQRT NKKSKVENPA TSTGHAKARK EKVGDRITAL QQLVSPFGKT 180 DTASVLHEAM GYIRFLHDQW GSRRA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007042552.2	1e-143	PREDICTED: transcription factor bHLH113 isoform X1
TrEMBL	A0A061E217	1e-150	A0A061E217_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 4 (Fragment)
STRING	EOX98383	1e-144	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	2e-23	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG007159t4
Entrez Gene	18608026

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]