PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG007543t2

Common Name

TCM_007543

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 190aa MW: 21916.1 Da PI: 8.0418

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG007543t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	126.9	1.6e-39	57	175	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++Pw+L+ k+ ae ++wyf+s+r +nr t++gyWk g d++v+ Thecc1EG007543t2 57 LPPGFRFYPTDEELVVHFLQRKAALLPCHP-DVIPDLDLYPYDPWELNGKALAEGNQWYFYSRRT--------QNRNTSNGYWKPMGIDEPVV 140 79***********************999.99**********977778899**984........58999*********** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++vg+kk + fy g+ p g kt+W+m+eyrl Thecc1EG007543t2 141 NSSSKKVGMKKYFLFYIGEGPAGIKTNWIMQEYRL 175 *******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-47	51	180	IPR003441	NAC domain
PROSITE profile	PS51005	42.858	57	189	IPR003441	NAC domain
Pfam	PF02365	3.0E-23	58	175	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
FFILLCFVSS LSYLFLSHTI NITHYKSFFF TILLFLELLS IAIGYISREM GDNNVNLPPG 60 FRFYPTDEEL VVHFLQRKAA LLPCHPDVIP DLDLYPYDPW ELNGKALAEG NQWYFYSRRT 120 QNRNTSNGYW KPMGIDEPVV NSSSKKVGMK KYFLFYIGEG PAGIKTNWIM QEYRLSDCDS 180 SSSRSSKRS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-37	53	175	13	142	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-37	53	175	13	142	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-37	53	175	13	142	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-37	53	175	13	142	NO APICAL MERISTEM PROTEIN
3swm_A	2e-37	53	175	16	145	NAC domain-containing protein 19
3swm_B	2e-37	53	175	16	145	NAC domain-containing protein 19
3swm_C	2e-37	53	175	16	145	NAC domain-containing protein 19
3swm_D	2e-37	53	175	16	145	NAC domain-containing protein 19
3swp_A	2e-37	53	175	16	145	NAC domain-containing protein 19
3swp_B	2e-37	53	175	16	145	NAC domain-containing protein 19
3swp_C	2e-37	53	175	16	145	NAC domain-containing protein 19
3swp_D	2e-37	53	175	16	145	NAC domain-containing protein 19
4dul_A	1e-37	53	175	13	142	NAC domain-containing protein 19
4dul_B	1e-37	53	175	13	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ801818	1e-117	KJ801818.1 Gossypium hirsutum NAC transcription factor (XND1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007043034.1	1e-102	PREDICTED: NAC domain-containing protein 104
Swissprot	Q8GWK6	5e-62	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A061E3E2	1e-138	A0A061E3E2_THECC; NAC domain-containing protein 18 isoform 2 (Fragment)
STRING	EOX98866	1e-139	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	3e-63	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	Thecc1EG007543t2
Entrez Gene	18608343

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]