PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG007609t1

Common Name

TCM_007609

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 792aa MW: 90511.4 Da PI: 7.2694

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG007609t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100.5	1.7e-31	88	179	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v+ ++ eHnHel+p Thecc1EG007609t1 88 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVREHNHELVP 179 9*************************************998888545677889*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.3E-30	88	179	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-32	301	393	IPR018289	MULE transposase domain
Pfam	PF04434	3.7E-12	569	615	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.251	581	617	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-9	592	619	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 792 aa Download sequence Send to blast
MDPEVLEFDI GLGGGGSSAR DGDDDANIGL DVDEDMADSP APSILASNSN GGGFGGGGSE 60 IYLPEGDQMD LEPYEGMEFE SEEAAKAFYN SYARRVGFST RVSSSRRSRR DGAIIQRQFV 120 CAKEGFRNLN EKRTKDREIK RPRTITRVGC KASLSVKMQD SGKWVVSGFV REHNHELVPP 180 DQVHCLRSHR QISGPAKTLI DTLQAAGMGP RRIMSALIKE YGGISKVGFT EVDCRNYMRN 240 NRQRSLEGDI QLLLDYLRQM QAENPNFFYA VQGDEDQALM SNVFWADPKS RMNYTYFGDT 300 VTFDTTYRSN RYRLPFAPFT GVNHHGQPVL FGCAFLINES EASFIWLFKT WLIAMSGRPP 360 VSITTDHDAV IRSAVMQVFP ETRHRFCKWH IFKKCQEKLS QVFLKHPTFE ADFHKCVNLP 420 ESIEEFESCW LSLVDRYELR DHEWLQIIYN DRRQWVPVYL RDTFFAEMSI TQRSDSMNSY 480 FDGFVNASTN LNQFFKLYEK ALESRNEKEV KADYGTMNTS PALKTPSPME KQASELYTRK 540 LFARFQEELV GTLTFMASKS DDDGDIITYQ VAKFGEDHKA YYVKFNVLEM KATCSCQMFE 600 FSGLLCRHVL AVFRVTNVLT LPSHYILKRW TRNAKSSVIL EERASDVYTN YLESHTVRYN 660 TLRHEAFKFV EEGSKSLNTY NVALGALQEA VKRVALAAKN EGRTRMVNGR VMGDSARDRA 720 NSIKHRVPSQ PLSEDDMDKK IRELTNELEF ANRKCEVYRA NLLSVLKDIE DHKLQLSIKV 780 QNIKISMKDG L*

Sequence ? help Back to Top

Protein Sequence Length: 792 aa Download sequence Send to blast

MDPEVLEFDI GLGGGGSSAR DGDDDANIGL DVDEDMADSP APSILASNSN GGGFGGGGSE  60
IYLPEGDQMD LEPYEGMEFE SEEAAKAFYN SYARRVGFST RVSSSRRSRR DGAIIQRQFV  120
CAKEGFRNLN EKRTKDREIK RPRTITRVGC KASLSVKMQD SGKWVVSGFV REHNHELVPP  180
DQVHCLRSHR QISGPAKTLI DTLQAAGMGP RRIMSALIKE YGGISKVGFT EVDCRNYMRN  240
NRQRSLEGDI QLLLDYLRQM QAENPNFFYA VQGDEDQALM SNVFWADPKS RMNYTYFGDT  300
VTFDTTYRSN RYRLPFAPFT GVNHHGQPVL FGCAFLINES EASFIWLFKT WLIAMSGRPP  360
VSITTDHDAV IRSAVMQVFP ETRHRFCKWH IFKKCQEKLS QVFLKHPTFE ADFHKCVNLP  420
ESIEEFESCW LSLVDRYELR DHEWLQIIYN DRRQWVPVYL RDTFFAEMSI TQRSDSMNSY  480
FDGFVNASTN LNQFFKLYEK ALESRNEKEV KADYGTMNTS PALKTPSPME KQASELYTRK  540
LFARFQEELV GTLTFMASKS DDDGDIITYQ VAKFGEDHKA YYVKFNVLEM KATCSCQMFE  600
FSGLLCRHVL AVFRVTNVLT LPSHYILKRW TRNAKSSVIL EERASDVYTN YLESHTVRYN  660
TLRHEAFKFV EEGSKSLNTY NVALGALQEA VKRVALAAKN EGRTRMVNGR VMGDSARDRA  720
NSIKHRVPSQ PLSEDDMDKK IRELTNELEF ANRKCEVYRA NLLSVLKDIE DHKLQLSIKV  780
QNIKISMKDG L*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007043118.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A061E1M0	0.0	A0A061E1M0_THECC; FAR1-related sequence 5
STRING	EOX98949	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Thecc1EG007609t1
Entrez Gene	18608394

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]