PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG007770t1
Common NameTCM_007770
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family CO-like
Protein Properties Length: 429aa    MW: 46863.9 Da    PI: 6.0687
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG007770t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.22.2e-05234335
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                      e+ C+ +   ++  +C+++   lC +C    H+
  Thecc1EG007770t1  2 EPLCDFCRGVRAVVYCKSDAARLCLSCDGCVHS 34
                      689******99****************999885 PP
2zf-B_box16.12.4e-054674432
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClle 32
                        C++++++++   C d +  lC+ C  +
  Thecc1EG007770t1 46 LLCEKCNSQPAVVRCLDEKLSLCQACDWN 74
                      57************************865 PP
3CCT62.71.1e-21372415144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       R++a++RY+eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ 
  Thecc1EG007770t1 372 RDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAG 415
                       899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.072147IPR000315B-box-type zinc finger
SMARTSM003362.4E-7147IPR000315B-box-type zinc finger
CDDcd000211.58E-4347No hitNo description
CDDcd000210.001654773No hitNo description
PfamPF062031.3E-16372414IPR010402CCT domain
PROSITE profilePS5101714.684372414IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MEPLCDFCRG VRAVVYCKSD AARLCLSCDG CVHSANLLSR RHARSLLCEK CNSQPAVVRC  60
LDEKLSLCQA CDWNSNSCSS FRHRREALNC YTGCPSLAEF RRIWSSVLDA SSSSAFDAGL  120
PVGSLPANDN CVINCLNQRE PGGAFGLVGT KLNEPDPCPK LEPWMGPSSL IPTNANYMPY  180
CRNQEPLFSE ESNIPKGCSD LKDFKLLDGD DLCEGINMND VQLNFETADE IFGCSQGQNR  240
SQFDNVGTEG LVMEKNITLT ESDVPIEHTL EASSSGQKDC MAFPGSQVGG SASVMAAMTG  300
TSNCMLMNRG CNRNINLEYP AGQIPSTIAL SLSNIAGEHG AADFQDYGLS PVFLTGESPW  360
ESNLEASCPL ARDKAKMRYN EKKKTRTFGK QIRYASRKAR ADTRKRVKGR FVKAGEAYDY  420
DPLVARNF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017971268.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 12
RefseqXP_017971269.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 12
TrEMBLA0A061E4E20.0A0A061E4E2_THECC; CONSTANS-like zinc finger protein, putative
STRINGEOX991810.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.11e-99B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]