PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG007787t1
Common NameTCM_007787
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 311aa    MW: 36022.6 Da    PI: 9.4436
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG007787t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF724.9e-2370119150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                       kri+n   rq+t+skRr+gilKKA+ELS LCd++v +++fs+tg+l  y+
  Thecc1EG007787t1  70 KRIDNPCSRQITYSKRREGILKKANELSALCDTDVGLLMFSPTGRLTSYA 119
                       79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.56762122IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-2962121IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-2463135IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-206484IPR002100Transcription factor, MADS-box
PROSITE patternPS00350064118IPR002100Transcription factor, MADS-box
PfamPF003194.6E-2171118IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-208499IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-2099120IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MKNESFLDFV RTSLRKCHVE NVNQLVVAGR RACRLLLGQL SLKLLQQVLF LLHSLIQFLL  60
TMGRKRLLMK RIDNPCSRQI TYSKRREGIL KKANELSALC DTDVGLLMFS PTGRLTSYAH  120
KGRIEDIFLR YIDQPDDFKG PVDNEEFLYQ SLKHLKYEGE MVDKIGSMEV LERKLRDLNR  180
QKYEAQDKLR SYNPDMTKIL SIPEAHLHQQ FVMDAIRRIE KLKKAKLLEK EISPSKPHNV  240
EIPIIEVKDS DLTTEESVNS KRNRNQSADD QKEETRLPTG PHLSISYLKT QKNWNLQNAE  300
DITSSEGHMC *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021298983.11e-170agamous-like MADS-box protein AGL66 isoform X3
TrEMBLA0A061E2G20.0A0A061E2G2_THECC; AGAMOUS-like 66 isoform 1
STRINGEOX991890.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16598611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.11e-31AGAMOUS-like 66
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]