PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG007787t4
Common NameTCM_007787
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 250aa    MW: 28975.1 Da    PI: 8.7409
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG007787t4genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.53.5e-23958150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      kri+n   rq+t+skRr+gilKKA+ELS LCd++v +++fs+tg+l  y+
  Thecc1EG007787t4  9 KRIDNPCSRQITYSKRREGILKKANELSALCDTDVGLLMFSPTGRLTSYA 58
                      79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-29160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.567161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-24274IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-20323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.2E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRKRLLMKR IDNPCSRQIT YSKRREGILK KANELSALCD TDVGLLMFSP TGRLTSYAHK  60
GRIEDIFLRY IDQPDDFKGP VDNEEFLYQS LKHLKYEGEM VDKIGSMEVL ERKLRDLNRQ  120
KYEAQDKLRS YNPDMTKILS IPEAHLHQQF VMDAIRRIEK LKKAKLLEKE ISPSKPHNVE  180
IPIIEVKDSD LTTEESVNSK RNRNQSADDQ KEETRLPTGP HLSISYLKTQ KNWNLQNAED  240
ITSSEGHMC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021298983.11e-170agamous-like MADS-box protein AGL66 isoform X3
TrEMBLA0A061E2G20.0A0A061E2G2_THECC; AGAMOUS-like 66 isoform 1
TrEMBLA0A061E3M20.0A0A061E3M2_THECC; AGAMOUS-like 66 isoform 4
STRINGEOX991890.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.12e-32AGAMOUS-like 66
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]