PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG007789t1

Common Name

TCM_007789

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GeBP

Protein Properties

Length: 134aa MW: 14635 Da PI: 10.3517

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG007789t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	31.8	4e-10	84	121	4	41
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefv 41 +lws Dei+lL+G++++k k+g++p++d ++f+ Thecc1EG007789t1 84 PQLWSAADEIALLKGIMEYKLKKGSDPYEDSSEFMISS 121 579******************************98665 PP

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MVGKQPIENL HGSDSKSDSN KSFPSLNIFD FTIKPILTLP QKSTLKSTPK PKLIASIESS 60 LKRKKPPLSG SNGDAGNVKI LKTPQLWSAA DEIALLKGIM EYKLKKGSDP YEDSSEFMIS 120 SNNRSKLMCP RIN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022725846.1	4e-19	STOREKEEPER protein-like
TrEMBL	A0A061E2G7	1e-89	A0A061E2G7_THECC; Uncharacterized protein
STRING	EOX99194	2e-90	(Theobroma cacao)

Link Out ? help Back to Top
Phytozome	Thecc1EG007789t1
Entrez Gene	18608542

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]