PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG008127t2

Common Name

TCM_008127

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 222aa MW: 25627.3 Da PI: 7.0718

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG008127t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.8	2.2e-09	25	77	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksLq 55 +++E++RR+++++ +++L +llP s ++ ls + +Av+YI+sLq Thecc1EG008127t2 25 RKIIEKNRRNHMKNLYSRLNSLLPRhTSkWILQEPLSLPDQIDEAVNYIQSLQ 77 589********************5555344556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.95E-5	19	81	No hit	No description
PROSITE profile	PS50888	12.011	20	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-10	20	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-9	22	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-5	25	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-5	26	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MELQMVYSVH KEMERSPCSS AKIERKIIEK NRRNHMKNLY SRLNSLLPRH TSKWILQEPL 60 SLPDQIDEAV NYIQSLQTRL KESREKKESL MGRKRSHRCT TATAAEAAAV SKSPEISINE 120 TDSAMEVVLM TGQDCQFMFY EMIRILHEEG AQVLNANFSV LGNTIVHIVH AEIGAHIFTF 180 GAEKIKEKLN KFVHNSSSER QLQQELWDFE IHPETWDFPI M*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007043612.1	1e-166	PREDICTED: uncharacterized protein LOC18608722 isoform X1
TrEMBL	A0A061EAX8	1e-164	A0A061EAX8_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2
STRING	EOX99443	1e-165	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1278	25	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-35	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG008127t2
Entrez Gene	18608722

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]