PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG008214t4

Common Name

TCM_008214

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HB-other

Protein Properties

Length: 1641aa MW: 184571 Da PI: 4.9063

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG008214t4	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	36.2	1.1e-11	2	35	24	57
S--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 24 ypsaeereeLAkklgLterqVkvWFqNrRakekk 57 yps+++r+eL+ +lgL++rq ++WF+ rR k++k Thecc1EG008214t4 2 YPSEATRAELSVQLGLSDRQLQMWFCHRRLKDRK 35 9*******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.135	1	36	IPR001356	Homeobox domain
CDD	cd00086	2.28E-8	1	35	No hit	No description
SuperFamily	SSF46689	1.67E-8	2	37	IPR009057	Homeodomain-like
Pfam	PF00046	3.4E-9	2	35	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.1E-10	2	35	IPR009057	Homeodomain-like
PROSITE profile	PS50827	16.82	503	562	IPR018501	DDT domain
SMART	SM00571	4.6E-22	503	562	IPR018501	DDT domain
Pfam	PF02791	2.2E-16	504	559	IPR018501	DDT domain
Pfam	PF05066	1.3E-15	685	753	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.0E-7	904	945	IPR028942	WHIM1 domain
Pfam	PF15613	1.3E-13	1086	1158	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1641 aa Download sequence Send to blast
MYPSEATRAE LSVQLGLSDR QLQMWFCHRR LKDRKAPPVK RRRKDSSLPA QVVGVAGEEM 60 GGGEAENEHG SDVSSLFGPG LHLRRAVPIP GMAVPRYYEM THSMAELELR AITFVELQLG 120 EPIRDDGPML GMEFDPLPPG AFGAPIGAST AVQQKQPGQP FETKIYERLD TKAVKGSVRA 180 VHEYQFLPEQ PSVRTETYER VALSYHYGSP TDDPHARASS LSTGCSFVHG NEKVPSGYGF 240 SGQMPNLNLL PQQSRQGHLL PTASGEYDNC SRKNSLTNTT VDAIIGAHPI SALESPFVSS 300 DRRVNLDEDA LRMERKRKSE EARIAREVEA HEKRIRKELE KQDILRRKRE EQIRKEMERH 360 DRERRKEEER LLREKQREEE RYQREQRREL ERREKFLMKE SIRAERMRQK EELRKEKEAA 420 RLKAANERAI ARKLAKESME LIEDERLELM ELAASSKGLS STLSLDFEIL QNLDIFRDKL 480 CVFPPKGVQL KRSFSIEPWN SSEESIGNLL MVWRFLITFA DVVGLWPFTL DELVQAFHDY 540 DPRLLGEIHV ALLRSIIKDI EDVARTPSTG LGASQNNAAN PGGGHLQIVE GAYAWGFDIR 600 SWQGHLNMLT WPEILRQFAL SAGFGPQLKK RNIEQAYLRD ENEGNDGEDI ITNLRNGAAA 660 ENAVAIMQER GFSNPRRSRH RLTPGTVKFA AFHVLSLEDS DGLTILEVAE KIQKSGLRDL 720 TTSKTPEASI AAALSRDTKL FERTAPSTYC VRSPYRKDPA DAEAILSAAR ERIRVLKSGF 780 VGEDAEGAER DEDSESDIAE DLEVDDLGAE INPKKEMLNS EGSSSCDAKT ILGNEKEICE 840 ILETPQGEVR NVCKALSSPT AGGLDEVKYI DAPVEQSMDA AGICNGAANA GLEDTEIDES 900 KLGEPWVQGL MEGDYSDLSV EERLNALIAL ISIAIEGNSI RVVLEERLEA ANALKKQMWA 960 EAQLDKRRMK EEFVLRTNFS SHMGNKMEPS LMMSSAECRQ SPQIISDRKN NESSVDLVVQ 1020 QECLNNPQND QNYLNNVPSE GNMPIQDFSI GPDNLQYPQP GCAAERSRSQ LKSYIGHKAE 1080 EMYVYRSLPL GQDRRHNRYW RFITSASWND PGCGRIFVEL LDGRWRLIDT EEGFDTLLSS 1140 LDVRGVRESH LHAMLQKIEM SFKEAVRRNK LHVNMERQNG DTIKKEANEM ASGPDWNVSF 1200 ESPSSTVSGS DSDMSETSTS FSIELCRNEI EKNDALKRYR DFEKWMWKEC FSLSSFCATK 1260 YGRRRCKQLL GVCDSCFNIY FFEDNHCPSC HRTDIASRSM LNFSEHVAQC AKKLQLGPGF 1320 ALDGLVISPL RIRLTKLQLA LVEVSIPFEA LQSAWTEGYR NFWGMKLYSS TTAEELLQVL 1380 TLLESSITRD YLSSNFETTR ELLSPSILSG GVGDDSTNLE TVPVLPWIPK TTAAVALRLI 1440 EFDAAISYTL KQRAETHKGA GECMGRGGRK RGRRSARSRP KPAKRMVEIA GERENPKEIM 1500 EKSSRNLATN TWNGDEVTRL KVRTADNASS SERSEYNDEN GQATGDEYDY LAGEDYAGGF 1560 NGKADDVMEG SEYNIDGDED DDGEERDDIA EGEQGNFIVG GYINENSDEE EIRNGDDPED 1620 SDPYVKQYGY STEASSDFSE *

Sequence ? help Back to Top

Protein Sequence Length: 1641 aa Download sequence Send to blast

MYPSEATRAE LSVQLGLSDR QLQMWFCHRR LKDRKAPPVK RRRKDSSLPA QVVGVAGEEM  60
GGGEAENEHG SDVSSLFGPG LHLRRAVPIP GMAVPRYYEM THSMAELELR AITFVELQLG  120
EPIRDDGPML GMEFDPLPPG AFGAPIGAST AVQQKQPGQP FETKIYERLD TKAVKGSVRA  180
VHEYQFLPEQ PSVRTETYER VALSYHYGSP TDDPHARASS LSTGCSFVHG NEKVPSGYGF  240
SGQMPNLNLL PQQSRQGHLL PTASGEYDNC SRKNSLTNTT VDAIIGAHPI SALESPFVSS  300
DRRVNLDEDA LRMERKRKSE EARIAREVEA HEKRIRKELE KQDILRRKRE EQIRKEMERH  360
DRERRKEEER LLREKQREEE RYQREQRREL ERREKFLMKE SIRAERMRQK EELRKEKEAA  420
RLKAANERAI ARKLAKESME LIEDERLELM ELAASSKGLS STLSLDFEIL QNLDIFRDKL  480
CVFPPKGVQL KRSFSIEPWN SSEESIGNLL MVWRFLITFA DVVGLWPFTL DELVQAFHDY  540
DPRLLGEIHV ALLRSIIKDI EDVARTPSTG LGASQNNAAN PGGGHLQIVE GAYAWGFDIR  600
SWQGHLNMLT WPEILRQFAL SAGFGPQLKK RNIEQAYLRD ENEGNDGEDI ITNLRNGAAA  660
ENAVAIMQER GFSNPRRSRH RLTPGTVKFA AFHVLSLEDS DGLTILEVAE KIQKSGLRDL  720
TTSKTPEASI AAALSRDTKL FERTAPSTYC VRSPYRKDPA DAEAILSAAR ERIRVLKSGF  780
VGEDAEGAER DEDSESDIAE DLEVDDLGAE INPKKEMLNS EGSSSCDAKT ILGNEKEICE  840
ILETPQGEVR NVCKALSSPT AGGLDEVKYI DAPVEQSMDA AGICNGAANA GLEDTEIDES  900
KLGEPWVQGL MEGDYSDLSV EERLNALIAL ISIAIEGNSI RVVLEERLEA ANALKKQMWA  960
EAQLDKRRMK EEFVLRTNFS SHMGNKMEPS LMMSSAECRQ SPQIISDRKN NESSVDLVVQ  1020
QECLNNPQND QNYLNNVPSE GNMPIQDFSI GPDNLQYPQP GCAAERSRSQ LKSYIGHKAE  1080
EMYVYRSLPL GQDRRHNRYW RFITSASWND PGCGRIFVEL LDGRWRLIDT EEGFDTLLSS  1140
LDVRGVRESH LHAMLQKIEM SFKEAVRRNK LHVNMERQNG DTIKKEANEM ASGPDWNVSF  1200
ESPSSTVSGS DSDMSETSTS FSIELCRNEI EKNDALKRYR DFEKWMWKEC FSLSSFCATK  1260
YGRRRCKQLL GVCDSCFNIY FFEDNHCPSC HRTDIASRSM LNFSEHVAQC AKKLQLGPGF  1320
ALDGLVISPL RIRLTKLQLA LVEVSIPFEA LQSAWTEGYR NFWGMKLYSS TTAEELLQVL  1380
TLLESSITRD YLSSNFETTR ELLSPSILSG GVGDDSTNLE TVPVLPWIPK TTAAVALRLI  1440
EFDAAISYTL KQRAETHKGA GECMGRGGRK RGRRSARSRP KPAKRMVEIA GERENPKEIM  1500
EKSSRNLATN TWNGDEVTRL KVRTADNASS SERSEYNDEN GQATGDEYDY LAGEDYAGGF  1560
NGKADDVMEG SEYNIDGDED DDGEERDDIA EGEQGNFIVG GYINENSDEE EIRNGDDPED  1620
SDPYVKQYGY STEASSDFSE *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017971056.1	0.0	PREDICTED: homeobox-DDT domain protein RLT2 isoform X1
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A061E3I6	0.0	A0A061E3I6_THECC; Homeodomain-like transcriptional regulator, putative isoform 4
STRING	EOX99523	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Thecc1EG008214t4
Entrez Gene	18608772

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]