PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG008255t3

Common Name

TCM_008255

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

VOZ

Protein Properties

Length: 437aa MW: 48510.4 Da PI: 5.0499

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG008255t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	442.4	5.7e-136	190	406	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 pppsaf+gpkcalwdctrpaqgs+w+ dycssfhatlalne++pg+tp+lrp+gi+lkd+ll++al+ak+qgk+vgip+cegaat+kspwna+ Thecc1EG008255t3 190 PPPSAFMGPKCALWDCTRPAQGSDWYYDYCSSFHATLALNEDPPGMTPILRPGGISLKDNLLLDALRAKTQGKNVGIPQCEGAATMKSPWNAT 282 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfdlsllege irewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgg+krsyymdpqps+++ewhl+eyei+ +da+alyrle Thecc1EG008255t3 283 ELFDLSLLEGEIIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKEFGGQKRSYYMDPQPSGQYEWHLFEYEIYGCDAFALYRLE 375 ***************************************************************************************** PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 lkl++ekks+k kvskdsladlqkk+grlta Thecc1EG008255t3 376 LKLANEKKSPKVKVSKDSLADLQKKMGRLTA 406 ***************************97 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048578	Biological Process	positive regulation of long-day photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MVDNAKNRLN NLQERFTDLQ AARKEGRAGD VAVLEEQVYQ SLREWKAELC APSPATSLLG 60 GSLGSFSDDI NRLLQLYEEE DDASSPLKGP AVLKPETDVQ SLNPCNLPVV PEDYLVNHEL 120 QQHGLQGFDP CKVSTSALET TAVGNDINYQ LDYHPFDLQQ EFDHGPLIGA NGTEDCVKDA 180 SPNILPNVSP PPSAFMGPKC ALWDCTRPAQ GSDWYYDYCS SFHATLALNE DPPGMTPILR 240 PGGISLKDNL LLDALRAKTQ GKNVGIPQCE GAATMKSPWN ATELFDLSLL EGEIIREWLF 300 FDKPRRAFES GNRKQRSLPD YSGRGWHESR KQVMKEFGGQ KRSYYMDPQP SGQYEWHLFE 360 YEIYGCDAFA LYRLELKLAN EKKSPKVKVS KDSLADLQKK MGRLTAEVPG DDRSPGKGKT 420 KASKKADARN VSSAQD*

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MVDNAKNRLN NLQERFTDLQ AARKEGRAGD VAVLEEQVYQ SLREWKAELC APSPATSLLG  60
GSLGSFSDDI NRLLQLYEEE DDASSPLKGP AVLKPETDVQ SLNPCNLPVV PEDYLVNHEL  120
QQHGLQGFDP CKVSTSALET TAVGNDINYQ LDYHPFDLQQ EFDHGPLIGA NGTEDCVKDA  180
SPNILPNVSP PPSAFMGPKC ALWDCTRPAQ GSDWYYDYCS SFHATLALNE DPPGMTPILR  240
PGGISLKDNL LLDALRAKTQ GKNVGIPQCE GAATMKSPWN ATELFDLSLL EGEIIREWLF  300
FDKPRRAFES GNRKQRSLPD YSGRGWHESR KQVMKEFGGQ KRSYYMDPQP SGQYEWHLFE  360
YEIYGCDAFA LYRLELKLAN EKKSPKVKVS KDSLADLQKK MGRLTAEVPG DDRSPGKGKT  420
KASKKADARN VSSAQD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007043719.2	0.0	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	1e-170	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A061E3L6	0.0	A0A061E3L6_THECC; Vascular plant one zinc finger protein isoform 1
STRING	EOX99553	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-162	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	Thecc1EG008255t3
Entrez Gene	18608793

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]