PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG008255t4

Common Name

TCM_008255

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

VOZ

Protein Properties

Length: 454aa MW: 50366.5 Da PI: 5.3796

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG008255t4	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	437.3	2.1e-134	206	423	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwna. 92 pppsaf+gpkcalwdctrpaqgs+w+ dycssfhatlalne++pg+tp+lrp+gi+lkd+ll++al+ak+qgk+vgip+cegaat+kspwna Thecc1EG008255t4 206 PPPSAFMGPKCALWDCTRPAQGSDWYYDYCSSFHATLALNEDPPGMTPILRPGGISLKDNLLLDALRAKTQGKNVGIPQCEGAATMKSPWNAt 298 89***************************************************************************************95 PP VOZ 93 aelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrl 185 aelfdlsllege irewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgg+krsyymdpqps+++ewhl+eyei+ +da+alyrl Thecc1EG008255t4 299 AELFDLSLLEGEIIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKEFGGQKRSYYMDPQPSGQYEWHLFEYEIYGCDAFALYRL 391 69*************************************************************************************** PP VOZ 186 elklvdekksakgkvskdsladlqkklgrlta 217 elkl++ekks+k kvskdsladlqkk+grlta Thecc1EG008255t4 392 ELKLANEKKSPKVKVSKDSLADLQKKMGRLTA 423 ****************************97 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048578	Biological Process	positive regulation of long-day photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MQNNSKNKCI SASHQLMVDN AKNRLNNLQE RFTDLQAARK EGRAGDVAVL EEQVYQSLRE 60 WKAELCAPSP ATSLLGGSLG SFSDDINRLL QLYEEEDDAS SPLKGPAVLK PETDVQSLNP 120 CNLPVVPEDY LVNHELQQHG LQGFDPCKVS TSALETTAVG NDINYQLDYH PFDLQQEFDH 180 GPLIGANGTE DCVKDASPNI LPNVSPPPSA FMGPKCALWD CTRPAQGSDW YYDYCSSFHA 240 TLALNEDPPG MTPILRPGGI SLKDNLLLDA LRAKTQGKNV GIPQCEGAAT MKSPWNATAE 300 LFDLSLLEGE IIREWLFFDK PRRAFESGNR KQRSLPDYSG RGWHESRKQV MKEFGGQKRS 360 YYMDPQPSGQ YEWHLFEYEI YGCDAFALYR LELKLANEKK SPKVKVSKDS LADLQKKMGR 420 LTAEVPGDDR SPGKGKTKAS KKADARNVSS AQD*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MQNNSKNKCI SASHQLMVDN AKNRLNNLQE RFTDLQAARK EGRAGDVAVL EEQVYQSLRE  60
WKAELCAPSP ATSLLGGSLG SFSDDINRLL QLYEEEDDAS SPLKGPAVLK PETDVQSLNP  120
CNLPVVPEDY LVNHELQQHG LQGFDPCKVS TSALETTAVG NDINYQLDYH PFDLQQEFDH  180
GPLIGANGTE DCVKDASPNI LPNVSPPPSA FMGPKCALWD CTRPAQGSDW YYDYCSSFHA  240
TLALNEDPPG MTPILRPGGI SLKDNLLLDA LRAKTQGKNV GIPQCEGAAT MKSPWNATAE  300
LFDLSLLEGE IIREWLFFDK PRRAFESGNR KQRSLPDYSG RGWHESRKQV MKEFGGQKRS  360
YYMDPQPSGQ YEWHLFEYEI YGCDAFALYR LELKLANEKK SPKVKVSKDS LADLQKKMGR  420
LTAEVPGDDR SPGKGKTKAS KKADARNVSS AQD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007043719.2	0.0	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	1e-174	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A061EB77	0.0	A0A061EB77_THECC; Vascular plant one zinc finger protein isoform 4
STRING	EOX99553	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11060	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-166	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	Thecc1EG008255t4
Entrez Gene	18608793

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]