PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG008477t1
Common NameTCM_008477
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 257aa    MW: 29238.9 Da    PI: 9.3615
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG008477t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1661.3e-51141381128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeelvv+yL++kv + +l++ ++i+evd++k++Pw+Lp      e+e yfFs+r+ ky++g+r+nrat sgyWkatg dk+++
  Thecc1EG008477t1  14 LPPGFRFHPTDEELVVQYLRRKVLAWPLPA-SIIPEVDVCKADPWELPGD---LEQERYFFSTREAKYPNGNRSNRATVSGYWKATGIDKQII 102
                       79****************************.89***************54...46799*********************************99 PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ ++++vg+kktLvfy+g+ p+g++tdW+mheyrl
  Thecc1EG008477t1 103 TSrSNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRL 138
                       8857778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-5910173IPR003441NAC domain
PROSITE profilePS5100557.7314173IPR003441NAC domain
PfamPF023656.6E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEKLNFVKNG VLRLPPGFRF HPTDEELVVQ YLRRKVLAWP LPASIIPEVD VCKADPWELP  60
GDLEQERYFF STREAKYPNG NRSNRATVSG YWKATGIDKQ IITSRSNQVV GMKKTLVFYR  120
GKPPHGSRTD WIMHEYRLVS AETAACNAPH KKSQTQSHAV PMENWVLCRI FLKKRSSTTK  180
NDDDSMQSCN ENGARKVRTS RPVFYDFLTK DRTDLNLAPS CSSSGSSGIT EVSHNDTDDH  240
EESSSCNSFP YFRRKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-521218015171NO APICAL MERISTEM PROTEIN
1ut4_B4e-521218015171NO APICAL MERISTEM PROTEIN
1ut7_A4e-521218015171NO APICAL MERISTEM PROTEIN
1ut7_B4e-521218015171NO APICAL MERISTEM PROTEIN
3swm_A5e-521218018174NAC domain-containing protein 19
3swm_B5e-521218018174NAC domain-containing protein 19
3swm_C5e-521218018174NAC domain-containing protein 19
3swm_D5e-521218018174NAC domain-containing protein 19
3swp_A5e-521218018174NAC domain-containing protein 19
3swp_B5e-521218018174NAC domain-containing protein 19
3swp_C5e-521218018174NAC domain-containing protein 19
3swp_D5e-521218018174NAC domain-containing protein 19
4dul_A4e-521218015171NAC domain-containing protein 19
4dul_B4e-521218015171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007043870.20.0PREDICTED: NAC domain-containing protein 83
SwissprotQ9FY931e-102NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A061E5W20.0A0A061E5W2_THECC; NAC domain protein, IPR003441
STRINGEOX997010.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-104NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]