PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG008671t2

Common Name

TCM_008671

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

SBP

Protein Properties

Length: 246aa MW: 26723.5 Da PI: 8.9769

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG008671t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	48.4	2.6e-15	5	35	48	78
SEEETTT--SS--S-STTTT-------S--- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh+l efDe+krsCr+rL++hn+rrrk+q+ Thecc1EG008671t2 5 RFHSLVEFDEGKRSCRKRLDGHNRRRRKPQP 35 9***************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	14.323	1	33	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.8E-8	5	32	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	4.5E-4	5	20	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.92E-12	5	38	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MHYIRFHSLV EFDEGKRSCR KRLDGHNRRR RKPQPDSLSV NSGRFLSNHQ GTRYLPFSNH 60 QIFSATAVTS SWVGSVKVET DIKSELNFSS RNSLFRGSSS QNCKEEKHFS FLQSTSLSLP 120 GVSVCQPFLD ANPLSGNGGS SRKIFSNGLN QVINSNRALS LLSSQPAETG EIGLSPCPMV 180 QSGPASSLNQ NLHYNGLGME GEQVGSILAS DGSSNTNFHG NEMFQTGHPG SSSSGTHHTL 240 SFSWE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	32	KRSCRKRLDGHNRRRRKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017970620.1	1e-172	PREDICTED: squamosa promoter-binding-like protein 16
Refseq	XP_017970621.1	1e-172	PREDICTED: squamosa promoter-binding-like protein 16
TrEMBL	A0A061E583	1e-178	A0A061E583_THECC; Squamosa promoter-binding protein transcription factor family protein, putative isoform 2
STRING	EOX99771	1e-173	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	3e-18	SBP family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG008671t2
Entrez Gene	18608951

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]